Class "mirnaContext"

Description

A class to represent the genomic context of a microRNA

Objects from the Class

Objects can be created by calls of the form new("mirnaContext", contextTranscriptID, contextOverlapSense, contextOverlapType, contextNumber, contextTranscriptSource, contextTranscriptName).

Slots

contextTranscriptID:

Object of class "character" A character string for Transcript identifer overlapping a microRNA.

contextOverlapSense:

Object of class "character" A character string for the Strand of transcript.

contextOverlapType:

Object of class "character" A character string for the of Type of overlap (exon, intron, 3' or 5' UTR).

contextNumber:

Object of class "numeric" A numeric vector for the Type of overlap number (eg exon 3).

contextTranscriptSource:

Object of class "character" A character string for the Transcript database.

contextTranscriptName:

Object of class "character" A character string for the Transcript Name.

Methods

contextTranscriptID

signature(object = "mirnaContext"): The get method for slot contextTranscriptID.

contextOverlapSense

signature(object = "mirnaContext"): The get method for slot contextOverlapSense.

contextOverlapType

signature(object = "mirnaContext"): The get method for slot contextOverlapType.

contextNumber

signature(object = "mirnaContext"): The get method for slot contextNumber.

contextTranscriptSource

signature(object = "mirnaContext"): The get method for slot contextTranscriptSource.

contextTranscriptName

signature(object = "mirnaContext"): The get method for slot contextTranscriptName.

show

signature(x = "mirnaContext"): The method for pretty print.

See Also

mirbaseCONTEXT