Map Uniprot accession numbers with Systematic ORF identifiers

Description

org.Sc.sgdUNIPROT is an R object that contains mappings between Systematic ORF identifiers and Uniprot accession numbers.

Details

This object is a simple mapping of Systematic ORF identifiers http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene to Uniprot Accession Numbers.

Mappings were based on data provided by: Entrez Gene ftp://ftp.ncbi.nlm.nih.gov/gene/DATA With a date stamp from the source of: 2013-Sep12

Examples

    x <- org.Sc.sgdUNIPROT
    # Get the Systematic ORF IDs that are mapped to a Uniprot ID
    mapped_genes <- mappedkeys(x)
    # Convert to a list
    xx <- as.list(x[mapped_genes])
    if(length(xx) > 0) {
      # Get the Uniprot gene IDs for the first five genes
      xx[1:5]
      # Get the first one
      xx[[1]]
    }